Protein Structure
AlphaFold predictions · pLDDT confidence · functional binding sites
Protein structure coverage
| Species | AlphaFold PDBs | Binding site annotation | Status |
|---|---|---|---|
| Arabidopsis | 25,548 | — | Ready |
| Rapeseed / Cabbage / Radish / Cauliflower | — | — | Coming Soon |
What you get per protein
| 3D Structure | Interactive AlphaFold prediction rendered with MolStar (rotate / zoom / residue-level) | |
| pLDDT Confidence | Per-residue confidence score: Excellent (>90) / Good (70-90) / Fair (50-70) / Low (<50) | |
| Binding Sites (GPSite) | AI-predicted functional sites: DNA / RNA / Peptide / Protein / ATP / HEM / ZN / CA / MG / MN | |
| Residue Annotations | Per-residue amino acid + site type + confidence score (Arabidopsis) | |
| PDB Download | Full PDB file download for offline analysis (PyMOL / ChimeraX / Rosetta) |
What Protein Chat can tell you
- Structural quality interpretation based on pLDDT score (fold reliability)
- Functional hints from predicted binding sites (e.g. likely DNA-binding protein)
- One practical experimental suggestion (e.g. suitable for docking study)
Try these Gene IDs:
AT1G01020 (Arabidopsis) · BnaA01G0000100ZS (Rapeseed) · BraA01g000020 (ChineseCabbage)